Karasuma Kyouko no Jikenbo
Kyoko Karasuma the detective of Asakusa police department.

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Mystery manga that contain supernatural/mythological/folklore beings. May only make mention of these things or may actually be set in a world where they're real. "Beings" includes creatures, spirits, youkai, gods e.t.c. People with supernatural powers are not included.

Only series focusing on or centred around said beings have been added. Only the first entry has been added if it's part of a series and manga only.

Rules are the same: there is no anime adaptation, manga must be good plus it should be pretty underrated.

Vol I: stacks/4593
My favourite one-shots: stacks/5034

Ranges from professional detectives to cops to women or girls investigating more or less serious cases.

Stories that mainly involve youkai, but also includes gods, folklore, ghosts, and the occult.

I've read most of these, so they're available somewhere to read, though possibly incomplete.