 If you liked
Black Bullet
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 ...then you might like
Kuusen Madoushi Kouhosei no Kyoukan
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In both mangas, a pair (group in Kuusen Madoushi) of people fight off groups of "bug monsters" that threaten the lives of citizens. Both males seem similar in most aspects, mysterious, and also have similar appearances. Both males also have to handle girl(s) who he is supposed to fight off these "bug monsters". Both mangas also have humans that live in secluded areas. These mangas do have differences, as in Black Bullet, the females wield a special ability in which they are able to fight and have animal traits, whereas in Kuusen Madoushi, they just have some sort of special ability.