If you liked
Zelda no Densetsu: Mugen no Sunadokei
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...then you might like
Oounabara to Wadanohara
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Wadanohara and the Great Blue Sea and The Legend of Zelda: Phantom Hourglass are two shot manga based off of (apparently) fairly popular video games themed around the ocean. The main character has a ship and companions with whom they travel with along the seas and share many moments of cutesy comedic banter throughout their fantasy quest. The past also haunts a character or two, which adds a bit of mystery to the story.